Huge refactoring

2021-06-22 12:23:03 +02:00
parent a286c08b72
commit 0dc9e8fc7b
12 changed files with 343 additions and 361 deletions
@@ -0,0 +1,106 @@
+plot : # Plot parameters
+    put_title : False                 # Add a title to plot
+
+    # Maps
+    ntick     : 6                     # Number of ticks for maps
+
+    # Overlays
+    vel_red   : 40                    # Take point each vel_red for velocities
+
+    time_fmt  :  "time = {:.3g} {}"   # Time format string, 1st field is time and 2nd is unit
+
+disk: # Disk speficic parameters
+    enable    : False                 # Enable specific disk analysis
+    center    : [0.5, 0.5, 0.5]       # Position of the center of the disk (in fraction of lbox)
+    binning   : "log"                 # Kind of binning (lin : linear, log : logarithmic)
+    mass_star : 1.                    # Mass of the central star
+    nb_bin    : 100                   # Number of bins for averaged quantities
+    bin_in    : 1e-3                  # Outer radius of the inner bin
+    bin_out   : 0.25                  # Inner radius of the outer bin
+    rmin_pdf  : 0.075                 # Inner radius for PDF computation
+    rmax_pdf  : 0.3                   # Outer radius for PDF computation
+
+
+pdf: # parameters for probability density functions
+    nb_bin    : 100                   # Number of bins for the PDF
+    range     : [-1.5, 2.5]           # Range of the PDF (log of fluctuation)
+    xmin_fit  : 0.3                   # Lower boundary of the fit (log of fluctuation)
+    xmax_fit  : 1.5                   # Upper boundary of the fit (log of fluctuation)
+    fit_cut   : 1e-4                  # Exclude value that are < fit_cut * maximum
+
+
+filaments:  # parameters for FilFinder
+     datamap : "fluct_coldens"
+     verbose : False
+     rmin    : 0.15 # In fraction of the box (zoom to be taken into account)
+     rmax    : 0.45 # In fraction of the box (idem)
+     size_thresh   : 400 # in pixels**2
+     skel_thresh   : 50 # in pixels
+     branch_thresh : 50 # in pixels
+     glob_thresh   : 1.5  # in datamap unit
+
+pymses: # Parameters for Pymses reader
+
+    # Source settings
+    variables :  ["rho","vel","Br","Bl","P", "g", "phi"]  # Read these grid variables
+    part_variables :  ["vel","mass","id","level","epoch"]  # Read these particles variables
+    order     : '<'                                       # Bit order
+
+
+    # Processing options
+    levelmax : 20                      # Maximal AMR level visited when looking levels
+    fft      : False                   # Quick and dirty rendering using FFT
+    verbose  : False                   # Let pymses write on standart output
+    multiprocessing : True             # Whether to use multiprocessing
+
+    # Camera settings
+    center   :  [0.5, 0.5, 0.5]        # Center of the image
+    zoom     : 1.                      # Zoom  of the image
+    map_size : 1024                    # Size of the computed maps in pixel
+
+    # Filter parameters
+    filter     : False                 # Enable filtering
+    min_coords : [0.35, 0.35, 0.45]
+    max_coords : [0.65, 0.65, 0.55]
+
+input: # Parameters on how to look for input files (= output from Ramses)
+
+    log_prefix     : "run.log"         # Prefix of the log file
+    label_filename : "label.txt"       # Name of the label file
+    nml_filename   : "run.nml"         # name of the namelist file
+    ramses_ism     : True              # If ramses-ism is used
+
+out: # Parameters for post processing
+    tag         : ""                   # Tag for the image
+    interactive : False                # Interactive mode (keep figures open)
+    save        : True                 # Save the plots on the disk
+    ext         : '.jpeg'              # extension for plots
+    fmt         : ""                   # Format of the output filename for plots
+    # The following keys are accepted
+    # {out} : The output directory (where hdf5  files are also stored)
+    # {run} : Name of the relevant run
+    # {num} : Name of the input file (from Ramses)
+    # {ext} : Extension defined above
+    # {name} : Name of the rule
+    # {tag} : Tag defined above
+    # {nml[nml_key]} : The value of nml_key in the namelist (ex: {nml[amr_params/levelmin]})
+
+
+process: # General setting of the post-processor module
+    verbose : False                    # Give more infos on what is going on
+    num_process : 1                    # Number of forks
+    save_cells : True                  # Save cells structure on disk
+    save_parts : True                  # Save particles on disk
+    unload_cells : True                # Save memory usage
+
+rules: # Specific rules parameters
+    turb_energy_threshold : -1       # Remove invalid data (<0 = no threshold)
+
+
+astrophysix: # Parameters for astrophysix and galactica
+    simu_fmt          : "{tag}_{run}"      # Format of the name of simulation
+    descr_fmt         : "{tag}_{run}"      # Format of the default description
+    # The following keys are accepted
+    # {run} : Name of the relevant run
+    # {tag} : Tag defined above
+    # {nml[nml_key]} : The value of nml_key in the namelist (ex: {nml[amr_params/levelmin]})