add astrophysix support, fix labels

pp_params.yml

@@ -22,22 +22,22 @@ disk: # Disk speficic parameters
 
 
 pdf: # parameters for probability density functions
-    nb_bin    : 200                   # Number of bins for the PDF
+    nb_bin    : 100                   # Number of bins for the PDF
     range     : [-1.5, 2.5]           # Range of the PDF (log of fluctuation)
-    xmin_fit  : 0.1                   # Lower boundary of the fit (log of fluctuation)
+    xmin_fit  : 0.3                   # Lower boundary of the fit (log of fluctuation)
     xmax_fit  : 1.5                   # Upper boundary of the fit (log of fluctuation)
     fit_cut   : 1e-4                  # Exclude value that are < fit_cut * maximum
 
 
 filaments:  # parameters for FilFinder
-     datamap : "rho_avg"
+     datamap : "fluct_coldens"
      verbose : False
      rmin    : 0.15 # In fraction of the box (zoom to be taken into account)
      rmax    : 0.45 # In fraction of the box (idem)
-     size_thresh   : 200 # in pixels**2
-     skel_thresh   : 100 # in pixels
-     branch_thresh : 100 # in pixels
-     glob_thresh   : 40  # in map unit
+     size_thresh   : 400 # in pixels**2
+     skel_thresh   : 50 # in pixels
+     branch_thresh : 50 # in pixels
+     glob_thresh   : 1.5  # in datamap unit
 
 pymses: # Parameters for Pymses reader
 
@@ -80,7 +80,7 @@ out: # Parameters for post processing
     # {ext} : Extension defined above
     # {name} : Name of the rule
     # {tag} : Tag defined above
-    # {nml[nml_key]} : The value of nml_key in the namelist (ex: amr_params/levelmin)
+    # {nml[nml_key]} : The value of nml_key in the namelist (ex: {nml[amr_params/levelmin]})
 
 
 process: # General setting of the post-processor module
@@ -91,3 +91,12 @@ process: # General setting of the post-processor module
 
 rules: # Specific rules parameters
     turb_energy_threshold : -1       # Remove invalid data (<0 = no threshold)
+
+
+astrophysix: # Parameters for astrophysix and galactica
+    simu_fmt          : "{tag}_{run}"      # Format of the name of simulation
+    descr_fmt         : "{tag}_{run}"      # Format of the default description
+    # The following keys are accepted
+    # {run} : Name of the relevant run
+    # {tag} : Tag defined above
+    # {nml[nml_key]} : The value of nml_key in the namelist (ex: {nml[amr_params/levelmin]})